When amino acids are used for energy, their carbon skeletons are transformed by a variety of pathways into acetyl CoA or intermediates of glycolysis or the citric acid cycle. While the degradative pathways of some amino acids are complex and beyond the scope of the MCAT, the simpler transaminase pathways are within the scope of study. It is very good to have a general sense of this subject even though you don't need to memorize all six steps in the breakdown of leucine.
One very important topic is the fate of α-amine group when the breakdown of an amino acid occurs. As a general rule these amine groups will be converted into urea and then excreted. The  pathway by which this occurs is called the urea cycle. The urea cycle takes place primarily in the liver, and to a lesser extent in the kidney. It was the first metabolic cycle discovered (Hans Krebs and Kurt Henseleit, 1932), five years before the discovery of the citric acid cycle.
Conceptual Vocabulary for Amino Acid Degradation and the Urea Cycle
|  The WikiPremed MCAT Course is a comprehensive course in the undergraduate level general sciences.  Undergraduate level physics, chemistry, organic chemistry and biology are presented by this course as a unified whole within a spiraling curriculum. Please read our policies on Privacy and Shipping & Returns.  Contact Us. MCAT is a registered trademark of the Association of American Medical Colleges, which does not endorse the WikiPremed Course. WikiPremed offers the customers of our publications or our teaching services no guarantees regarding eventual performance on the MCAT.   WikiPremed is a trademark of Wisebridge Learning Systems LLC. The work of WikiPremed is published under a Creative Commons Attribution NonCommercial ShareAlike License. There are elements of work here, such as a subset of the images in the archive from WikiPedia, that originated as GNU General Public License works, so take care to follow the unique stipulations of that license in printed reproductions. | 

